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  RNA- ‐seq analysis Mikael Huss Bioinforma7cs scien7st at WABI (Wallenberg Advanced Infrastructure for Bioi… ... Transcript 1. RNA- ‐seq analysis Mikael Huss Bioinforma7cs scien7st at WABI ...
  
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List of RNA-Seq bioinformatics tools - Wikipedia, the free encyclopedia

日期：2025-11-21

RNA-Seq (RNA-Seq.ppt ) is a technique that performs transcriptome studies based on next-generation sequencing technologies. This technique is largely dependent on bioinformatics tools developed to support the different steps of the process. Here are liste...

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PLOS ONE: RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datas

日期：2025-11-15

Abstract High-throughput RNA sequencing (RNA-seq) has become an instrumental assay for the analysis of multiple aspects of an organism's transcriptome. Further, the analysis of a biological specimen's associated microbiome can also be performed using RNA ...

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Quantitative bacterial transcriptomics with RNA-seq

日期：2025-11-19

Figure 1. Transcriptional feature map and analysis of the cysK-ptsHI-crr operon. The dRNA-seq data are available at GEO, GSE58556. (a) The genes and feature locations are drawn to scale and annotated to the positive strand of the E. coli MG1655 U00096.3 ....

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Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq : Nature

日期：2025-11-16

a, Hierarchical clustering of 124 Sftpc + cells from distal mouse lung epithelium of embryonic (E14.5, E16.5 and E18.5) and adult mice based on genes with highest principal-component loadings (Supplementary Data) in an unbiased PCA analysis (shown in b) o...

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Transcriptome-wide identification of RNA binding sites by CLIP-seq

日期：2025-11-19

Fig. 2. Overview of a typical bioinformatics pipeline for CLIP-seq data analysis. Raw CLIP-seq reads are first preprocessed to remove various non informative sequences and then mapped to the reference genome and to a representative transcriptome. High-aff...

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RNA helicase DDX21 coordinates transcription and ribosomal RNA processing : Nature : Nature Publishi

日期：2025-11-18

a, MEME analysis of DDX21-bound regions defined by DDX21 ChIP-seq. Motif logo, annotated transcription factor, number of motif instances within the ChIP-seq regions, Z score, and P value for each motif are shown. b, DDX21 ChIP-qPCR from HeLa cell chromati...

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PLOS ONE: RNA Expression Profiling of Human iPSC-Derived Cardiomyocytes in a Cardiac Hypertrophy Mod

日期：2025-11-21

miRNA-Seq analysis Following reference alignment and read filtering of the miRNA-Seq data, between 863,000 and 1.9 million reads aligned to the custom reference set. Of the total mapped reads, 67% in the control-CMs and 85% in the ET1-CMs represented eith...

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